Publications
You can also find my articles on my Google Scholar profile.
(# indicates co-first author)
- Ziyan Rao#, Min Zhang#, Shaodong Huang, Chenyang Wu, Yuheng Zhou, Weijie Zhang, Xia Lin, Dongyu Zhao. CADTAD: CAncer Driver Topologically Associated Domains identify oncogenic and tumor suppressivelncRNAs. Genome Res. 2025 Aug 1. DOI
- Ziyan Rao, Chenyang Wu, Yunxi Liao, Chuan Ye, Shaodong Huang, Dongyu Zhao. POCALI: Prediction and insight On CAncer LncRNAs by Integrating multi-omics data with machine learning. Small Methods. Small Methods. 2025 Jul 9. DOI, GitHub
- Yun Lv#, Ziyan Rao#, Lulu Liu#, Jun Jia#, Chenyang Wu, Jun Xu, Yuanyuan Du, Yinan Liu, Bei Liu, Jihang Shi, Guangya Li, Dongyu Zhao, Hongkui Deng. The efficient generation of functional human hepatocytes from chemically induced pluripotent stem cells. Cell Prolif. 2023 Oct 9. DOI
- Yunxi Liao, Ziyan Rao, Shaodong Huang, Dongyu Zhao. Protocol to analyze immune cells in the tumor microenvironment by transcriptome using machine learning. STAR Protoc. 2024 Jan 14. DOI
- Lingxuan Zhou, Guohong Zhang, Kai Zhang, Ziyan Rao, Zhanli Tang, Yang Wang, Jiahui Zhao. The role of PAR2 in regulating MIF release in house dust mite-induced atopic dermatitis. Front Immunol. 2024 Oct 2. DOI
- Lina Bu, Shaodong Huang, Ziyan Rao, Chenyang Wu, Bryan-Yu Sun, Yanhua Liu, Lin He, Dongyu Zhao. CHD6 eviction of promoter nucleosomes maintains housekeeping transcriptional program in prostate cancer. Mol Ther - Nucleic Acids. 2024 Nov 16. DOI
- Chuan Ye, Xuemei Wang, Jun Lin, Chenyang Wu, Yuhua Gao, Chenghao Guo, Yunxi Liao, Ziyan Rao, Shaodong Huang, Weixuan Chen, Ying Huang, Jinpeng Sun, Dongyu Zhao, Changtao Jiang. Systematical identification of regulatory GPCRs by single-cell trajectory inference reveals the role of ADGRD1 and GPR39 in adipogenesis. Sci China Life Sci. 2025 Apr. DOI
- Shaodong Huang, Yulong Han, Yiran Liu, Lina Bu, Chenyang Wu, Ziyan Rao, Chuan Ye, Hansen Cheng, Yunxi Liao, Yunan Sun, Yushu Zou, Zixu Wang, Bryan-Yu Sun, Shu Meng, Dongyu Zhao. Super-enhancer-mediated circRNAs exhibit high splicing circularization diversity and transcriptional activity. Nucleic Acids Res. 2025 Jun 6. DOI